YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63101733
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMRVGAAAVL LCVLTLRSTS AVFLSKDEAS ALLQRFRRAN SGFLEEMKAG NLERECVEEI  60
   61 CDYEEAREVF EDDDRTKQFW LSYSNKEPCL TNPCRNNGTC VYLADSYYCL CAEGYEGKYC 120
  121 EKGLEETLKC QYVNGGCEQF CDGSGVRRSC SCAEGYALAD DGTSCVSQVD YPCGQIPVQK 180
  181 NTSQNQFLGG IHCPRGHCPW QVLIDYNGES VCGGALLEGP WLITAAHCVH QKDTRFLKAV 240
  241 TGEHDLDVLD GSEEPYEVSA VFIHPNYDPE TLDSDLALLR LRVPVQRSLY AVPICLPTPQ 300
  301 LARSELWAAR FHTLSGWGTR TAGHNLRREK GLKGPASGTL QRLAVPLLPA TQCGNANTTA 360
  361 NMFCAGYTEG DHASCRGHDG SPLVTRYGET SFLTGVVSWG RGCGPPGYYW IYTKVENFLI 420
  421 WMDTVMKTNT EDKSEQIANV STKTD

Type	Start	End	Confidence
Signal Peptide	1	21	0.57
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	445	0.99