YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66910420
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.75
Transmembrane Helix	35	57	0.80
Non-Cytoplasmic	58	72	0.66
Transmembrane Helix	73	93	0.82
Cytoplasmic	94	100	0.63
Transmembrane Helix	101	117	0.82
Non-Cytoplasmic	118	123	0.71
Transmembrane Helix	124	146	0.92
Cytoplasmic	147	156	0.87
Transmembrane Helix	157	179	0.92
Non-Cytoplasmic	180	186	0.80
Transmembrane Helix	187	207	0.96
Cytoplasmic	208	241	0.92
Transmembrane Helix	242	259	0.93
Non-Cytoplasmic	260	279	0.87
Transmembrane Helix	280	302	0.90
Cytoplasmic	303	309	0.82
Transmembrane Helix	310	328	0.93
Non-Cytoplasmic	329	334	0.82
Transmembrane Helix	335	356	0.93
Cytoplasmic	357	371	0.89
Transmembrane Helix	372	395	0.83
Non-Cytoplasmic	396	423	0.90
Transmembrane Helix	424	443	0.95
Cytoplasmic	444	485	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQKKKKRVN RSLLLAKKII IKDGGTPQGF GSPSVYHAVI VIFLEFFAWG LLTAPTLGAL  60
   61 DETFPKHTFL MNGLIQGVKG LLSFLSAPLI GALSDVWGRK SFLLLTVFFT CAPIPLMKIS 120
  121 PWWYFAMISV SGVFAVTFSV IFAYVADITQ EHERSMAYGM VSATFAASLV ISPAIGAYLS 180
  181 HVYGDTLVVV LASAIAMLDI CLILVAVPES LPEKMRPASW GAPISWEQAD PFASLRKVGQ 240
  241 DSTVLLICIT VFLSYLPEAG QNSSFFLYLQ QIMGFSSESV AAFIAVLGLL SVVAQTVVLS 300
  301 LLMRSIGNKN TILLGLGFQI LQLAWYGFGS EPWMMWAAGA VAAMSSITFP AVSALISRTA 360
  361 DPDQQGVGQG MVTGIRGLCN GLGPALYGFI FYIFHVELDK VPEKGPDVQH HRDLHQQSAI 420
  421 IPGPPFLFGA CSVLLALLVA LFIPEHPHMG TRSGSWKHHT SPHGHPHSPH PPGEAKEPLL 480
  481 QDTNV