YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66730575, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLDLALQG FAIFGFLLFL VLWLMHLVSI IYVRLHLNKK TPDKMPYSKL AGVSLLKPLK  60
   61 GVDPNLINNL ETFFELDYPK YEILLCVQDH DDPAIDVCKK LLGKYPNVDA RLFIGGKKVG 120
  121 INPKINNLMP AYEGARYELV WICDSGIRVK PDTLTDMANQ MTEKVGLVHG LPYVADRQGF 180
  181 AATLEQVYFG TSHPRSYISA NVTGIKCVTG MSCLMRKDIL DQAGGLIAFA QYIAEDYFMA 240
  241 KAIADRGWKF SMATQVAMQN SGSYSIAQFQ SRMIRWAKLR INMLPGTIIE PISECFVASL 300
  301 IIGWAAHHVF RWDIMVFFLC HCLAWFISDY IQLRGVQGGP PSFSKLDYAV AWFIRESMTI 360
  361 QIFLSALWDP TISWRAGRYR LRCGGTAEEI LDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.85
Transmembrane Helix	10	33	0.86
Cytoplasmic	34	280	0.97
Transmembrane Helix	281	305	0.73
Non-Cytoplasmic	306	313	0.51
Transmembrane Helix	314	333	0.75
Cytoplasmic	334	393	0.58