YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63100877, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRIHQHRRI CPTSPSTSGL STLHRGTEKL IEYKTYLQAL PYFDRLDYVS TMCNEQAYSL  60
   61 AVEKLLNIQA PPRAQWIRVL FGEMTRIMNH IMGITTHALD IGAMTPFFWM FEEREKLFEF 120
  121 YERVSGARMH AAYVRPGGVH QDMPLGLMDD IYEWCKNFSI RIDEVEEMLT NNRIWKNRTV 180
  181 GIGVIGAEEA LNYGFSGVML RGSGIKWDLR KSQPYDKYDE VEFDMAIGTN GDCYDRYLCR 240
  241 VEEMRQSLRI MHQCLNKMPP GEIKVDDAKI APPKRSEMKT SMESLIHHFK LYTEGYQVPP 300
  301 GATYTAIEAP KGEFGVYLVS DGSSRPYRCK IKAPGFAHLA GLDRMSQGHM LADVVAIIGT 360
  361 QDIVFGEVDR

Type	Start	End	Confidence
Cytoplasmic	1	86	0.52
Transmembrane Helix	87	110	0.47
Non-Cytoplasmic	111	370	0.98