YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182888918, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLTDCPSI DEFRNQVYST VYSIITVFGL MGNGFALYVL LRTYRQTSAF HIYMLNLGVS  60
   61 DLLCVSTLPL RVLYYINKGQ WNLGDFLCRL SSYALYVNLY CSVFFMMAMS FTRFLAIVFP 120
  121 VQNLRLATEK KAWIVCVCIW IFICMTSSPF LLSGQHTDPL TNKTKCFEPP EKPGSLDKLI 180
  181 MLNYFSLVVG FIIPFLVILL CYAGILRTLL RNTSGANKQR YTRNKAIRLI IVVMLAFLIS 240
  241 FMPYHIQRTL HLHFKSRKSA TCEEVNYMQK SVVITLCLAA ANSCFDPMLY FFSGENFRHR 300
  301 LSTFRRASGN AILPHKGRHP LQSSPPAEDS ELQSCNGSNT HG

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.93
Transmembrane Helix	20	41	0.93
Cytoplasmic	42	51	0.83
Transmembrane Helix	52	73	0.92
Non-Cytoplasmic	74	93	0.90
Transmembrane Helix	94	117	0.85
Cytoplasmic	118	131	0.89
Transmembrane Helix	132	152	0.95
Non-Cytoplasmic	153	183	0.96
Transmembrane Helix	184	206	0.91
Cytoplasmic	207	225	0.93
Transmembrane Helix	226	246	0.95
Non-Cytoplasmic	247	342	0.68