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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PCAT2_DANRE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPPHRVFAL PRQQSLLLPA VINPFVHDLS LSTADITKCF LLGIILVPLR AIFLLLVLLV  60
   61 MWPVSVIITF GQSLKGVVEP MTGWRRFLHR RVMTFLGRMY FFGMGFKVVV KGKKASTLEA 120
  121 PILAVAPHSS FFDAIACIES GLPSTVSRIE SLEAPIFGRF LRCVQPVLVS RTDPDSRRNT 180
  181 IIEIERRAKS GGHWPQVLIF PEGTCTNRSC LITFKQGGFV PGVPVQPVLI RYPNKLDTVT 240
  241 WTWQGPKSAR LLLLTLCQLC TTVEVEFLPP QVPTEMEKKC PLKFAQSVRA VMAKSLKLPV 300
  301 TDHTYEDCRL MIAAGELTLP MEAGLVEFTK ISRKLELKWD NVKKELESFA NIACSCKGGR 360
  361 ITVEEFASFL KLPISPALQQ LFALFDRNGD GTIDFREYVI GVTVLCRPAN NEEVIQTAFK 420
  421 LFDIDEDNCI TQEEFSSLLR SALGVCDLDV HSLFREIDAD GSGHITYDEF RSFALNHPEY 480
  481 AKLFTTYIEL QRYQGLQGDE TDFDSAFSHC CTAAYDEYQE DSASDKKDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle