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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|63100903, gi|...
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGMVQFRDL NPDVNVFQRK FVNEVRRCEE  60
   61 MDRKLRFVEK EIKKANIPTM DTGENPEVPF PRDMIDLEAT FEKLENELKG INTNQEALKK 120
  121 NFLELTELKH ILRRTQQFFD EMEDPNLLEE SSSLLDPSEA GRGAPLRLGF VAGVINRERI 180
  181 PTFERMLWRV CRGNVFLRQT EIEDPLEDPT TGDQVHKSVF IIFFQGDQLK NRVKKICEGF 240
  241 RASLYPCPET PQERKEMASG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKTM RVWFIKVRKM 300
  301 KAIYHTLNLC NIDVTQKCLI AEVWCPVSDL DSIQFALRRG TERSGSTVPS ILNRMQTKQT 360
  361 PPTYNKTNKF TSGFQNIVDA YGIGTYREIN PAPYTIITFP FLFAVMFGDM GHGVLMTSAA 420
  421 LYLVLRETRL LAQKSDNEMF NMIFAGRYII LLMGMFSVYT GLIYNDCFSK SLNMFSSGWS 480
  481 VRPMFAPNGN WTDQTLESNS VLQLNPSVSG VFGGPYPLGI DPIWNIAANK LTFLNSFKMK 540
  541 MSVILGVIHM LFGVTLSLFN HLYFKKPLNI FLNFIPEIVF MSSLFGYLIL LIFYKWIAYD 600
  601 AVTSKDAPSL LIAFINMCLF NYNDPTNKPL YRGQAGIQSL LVVIALACVP VMLVVKTMIL 660
  661 RRQHLWKKHL GTQKFGGVRV GNGPTEDEAE IIDHDQLSQH SEEGDEHSEE EPFNFGDMAV 720
  721 HQAIHTIEYC LGCISNTASY LRLWALSLAH AQLSEVLWGM VMRLGLSSRS GGGFFGLSII 780
  781 FSAFATLTVC ILLIMEGLSA FLHALRLHWV EFQNKFYTGQ GFKFVPFSFE SILEGRFDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle