YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66472918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGQQWVLV EMVQAFYEAP AYHLILEGFL ILWIIRLLFS KTYKLQERSD LTEKEKEELI  60
   61 EEWQPEPLVS PVSKDHPSLN YDVVTGPPSH KIIVNGKECI NFASFNFLGL LDNERVKLKA 120
  121 LASLKKYGVG TCGPRGFYGT FDVHLELEER LAKFMRTEEA IIYSYGFATI ASAIPAYSKR 180
  181 GDIIFVDEAA CFSIQKGLQA SRSFIKYFKH NDMEDLERLL KEQEIEDQKN PRKARVIRRF 240
  241 ILVEGLYINT ADICPLPELV KLKYKYKVRI FLEESMSFGV LGEHGRGVTE HFGVNIDDID 300
  301 LISANMENAL ASIGGFCCGR SFVIDHQRLS GQGYCFSASL PPMLAAAAIE ALNIMEEDPG 360
  361 IFRVLREKCR NVHKALQGTA GLKVVGESFA PALHLQLENS TGSRVNDLKL LRAIVDYSLD 420
  421 RQVALTLARY LDKEERFLPP PSIRVVVTVE QTQEEIEKAA QCIREAALHV LK

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.78
Transmembrane Helix	19	39	0.82
Cytoplasmic	40	159	0.68
Transmembrane Helix	160	177	0.36
Non-Cytoplasmic	178	472	0.71