YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62202172, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSAKKEMVT AMYPTSISTL LYFLCVAACI KRISGQIRKD EKLYPENFTR ILDRLLDGYD  60
   61 NRLRPGFGGP VTEVKTDIYV TSFGPVSDVE MEYTMDVFFR QTWVDRRLRY EGPVEILRLN 120
  121 NLMVTKVWTP DTFFRNGKRS VAHNMTAPNR LFRIMKNGTI LYTMRLTISA ECPMRLVNFP 180
  181 MDGHSCPLKF GSYAYPKTEM IYTWTKGPQH SVEVPPESSS LVQYDLIGQT VSSETVKSIT 240
  241 GEYVVMTVYF HLKRKMGYFM IQTYIPCIMT VILSQVSFWI NKESVPARTV FGITTVLTMT 300
  301 TLSISARHSL PKVSYATAMD WFIAVCFAFV FSALIEFAAV NYFTNAQAER AKRKQAKAAA 360
  361 AASVKSSTGK NKDTEEVLQQ NSDTNGNLRK RVNSNIQPQA ESKKTQRTEA SSKSGASSSK 420
  421 PTLTSQSSST SEGTSSFSSQ SRLSPSSASQ SNAAASSSSA SKTTPPAPPS TPTVPDKPSP 480
  481 GTTPAGSAPL HHLLGPKLEN IKKKEAKAQP QPAAPATGGA SKIDEYARIL FPVSFGAFNM 540
  541 VYWVVYLSKD TMEAKGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.57
Transmembrane Helix	11	30	0.60
Cytoplasmic	31	257	0.69
Transmembrane Helix	258	279	0.87
Non-Cytoplasmic	280	286	0.54
Transmembrane Helix	287	306	0.84
Cytoplasmic	307	317	0.47
Transmembrane Helix	318	340	0.87
Non-Cytoplasmic	341	557	0.58