YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891598, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSKLVLEG RISIISFISG LAVIIIPLLV NFGSHVDWIF DYLTDVNGKI AIAAYITVIN  60
   61 GFLLIIYKGP LYKVAVRACF LGFTFGCGLT LSFADTTWTH FGWYMCSLSF FHYSEYLVTA 120
  121 IINPRSLSLD SFLLNHSVEY TLAAVSSWLE FTVEKLLVPE IKQLNWLCLV GLVMVMCGEG 180
  181 LRKAAMLTAG SNFNHIVQNE KAQSHVLVTT GVYALFRHPS YVGWFYRSIG TQIMLCNPIC 240
  241 ILGYTVASWR FFRERIEEEE ISLIHFFGED YIEYKKKVFT GSPFISGIRV NS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	32	0.92
Non-Cytoplasmic	33	49	0.83
Transmembrane Helix	50	67	0.96
Cytoplasmic	68	73	0.78
Transmembrane Helix	74	94	0.86
Non-Cytoplasmic	95	135	0.53
Transmembrane Helix	136	152	0.39
Cytoplasmic	153	163	0.69
Transmembrane Helix	164	185	0.78
Non-Cytoplasmic	186	227	0.78
Transmembrane Helix	228	247	0.89
Cytoplasmic	248	292	0.89