YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60416027, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPDSAYNLT STNGSFHHNM TNSCEHTSTP EYQKKVIPAF YSLIFLFGFL GNMLVVCVLY  60
   61 HSSGRRTVAN TYLINLAMSD LLFLTSLPFW AVYYSLDYNW VFGEVMCKLC GGLITINVYA 120
  121 SIFFITCMSV DRYHAIVYPL HSQSSRSIKQ ARCVCGFIWV VAALTTLPTV VFRDIHPLNN 180
  181 NITACVIFYP NSYWHTGLTL AKNTLGFFLP FVVIATCYSR IAVHLLATPN HLELDSGRLV 240
  241 HVLHLVVAVV LAFFFCWFPF HVLAFLETLG QLGVRIDCWV QESIDKLLPY FICLGFSNSA 300
  301 INPFLYCFVG NHFREKLWQF YGDVLTQKRD SISTRLSSFS RKLSDLKESV PMEILDQQSS 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.96
Transmembrane Helix	39	61	0.91
Cytoplasmic	62	71	0.82
Transmembrane Helix	72	92	0.94
Non-Cytoplasmic	93	108	0.81
Transmembrane Helix	109	130	0.86
Cytoplasmic	131	150	0.88
Transmembrane Helix	151	172	0.90
Non-Cytoplasmic	173	203	0.87
Transmembrane Helix	204	222	0.91
Cytoplasmic	223	239	0.86
Transmembrane Helix	240	263	0.90
Non-Cytoplasmic	264	286	0.94
Transmembrane Helix	287	309	0.82
Cytoplasmic	310	360	0.87