YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66472524, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNMAREILA FILCTSGWVL ISSTLPTDYW KVSSIDGTVI TTATFWSNLW KTCVTDSTGV  60
   61 SNCKDFPSML ALDGYIQVCR GLMITAVCLG FFGSIFALIG MKCTKIGGPD KFKARVVCFA 120
  121 GFDFACTGLC SLTAYSLYAH RITSEFFDPM FVAQKYELGA ALFIGWAGST LCLLGGALFT 180
  181 LSMADGSSKK SSPNRRVASL MSGAMPQSQT SHTRRTLPEY SSTPQHFDKN AYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.95
Transmembrane Helix	8	27	0.93
Non-Cytoplasmic	28	77	0.96
Transmembrane Helix	78	100	0.90
Cytoplasmic	101	115	0.90
Transmembrane Helix	116	139	0.91
Non-Cytoplasmic	140	159	0.92
Transmembrane Helix	160	181	0.95
Cytoplasmic	182	233	0.96