YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66773070, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYPLPEGF TDFDMFAFGS ALLVGGLLGF FLNAISVLAF LRVREMQTPN NFFIFNLAVA  60
   61 DLSLNINGLV AAYACYLRHW PFGSEGCQLH AFQGMVSILA AISFLGAVAW DRYHQYCTKQ 120
  121 KMFWSTSITI SCLIWILAVF WAAMPLPAIG WGVFDFEPLR TCCTLDYSQG DRGYITYMLT 180
  181 ITVLYLAFPV LVLQSSYSAI HAYFKKTHHY RFNTGLPLKA LLFCWGPYVV VCSLACFEDV 240
  241 SVLSPRLRMV LPVLAKTSPI FHAVLYAYGN EFYRGGVWQF LTGQKSADKK K

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.95
Transmembrane Helix	17	41	0.89
Cytoplasmic	42	51	0.92
Transmembrane Helix	52	75	0.90
Non-Cytoplasmic	76	88	0.90
Transmembrane Helix	89	110	0.92
Cytoplasmic	111	122	0.87
Transmembrane Helix	123	144	0.91
Non-Cytoplasmic	145	174	0.93
Transmembrane Helix	175	197	0.84
Cytoplasmic	198	217	0.80
Transmembrane Helix	218	237	0.75
Non-Cytoplasmic	238	291	0.61