YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85774825, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVAPFAAFL ALALAATPQP SPQSARVASV PEAAGGVVMT ALPPPPSKVV RTTKTYGTVT  60
   61 LDHAAHLARK ISCKSCHGNG AVTKIEFTPR QAHDTCRSCH VQLAKGPTDC RGCHVVPPKE 120
  121 APAVAEAAPA PAAGAVIRAG EARPVMSAGP SAGAATGVAA VRGAAAVPSL PHGDAGEVEP 180
  181 GPALAPFVRT LEAGLSVLGG TGQDLVAGPS VRLTSHYDRA LLTHSLDWVG GRDQGRVLFM 240
  241 VGGGAELPVH ERVSLQLVGI GGVDAAGSTV VLMPALGARV GLAWRRPVSW LDTLTFSFSG 300
  301 VSDLVRRRND LGEREGGTMF AFGLMSGFRL EQFAR

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	335	0.90