YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRCM1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSRSEHSL QALSWRKLYL SRAKLKASSR TSALLSGFAM VAMVEVQLDT NHDYPPGLLI  60
   61 AFSACTTVLV AVHLFALMVS TCILPNIEAV SNVHNLNSVK ESPHERMHRH IELAWAFSTV 120
  121 IGTLLFLAGV VLLCWVKFLP IKPKGQKNGT VSAGVAAAIT STSIMVPFGL VFIVFAVHFY 180
  181 RSLVSHKTDR QFQELEELED LQNELDHREE VSTLQSPGSL YP

Type	Start	End	Confidence
Cytoplasmic	1	26	0.93
Transmembrane Helix	27	48	0.81
Non-Cytoplasmic	49	57	0.81
Transmembrane Helix	58	77	0.94
Cytoplasmic	78	112	0.90
Transmembrane Helix	113	136	0.91
Non-Cytoplasmic	137	154	0.87
Transmembrane Helix	155	180	0.87
Cytoplasmic	181	222	0.97