YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62871768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	37	0.89
Non-Cytoplasmic	38	71	0.94
Transmembrane Helix	72	92	0.95
Cytoplasmic	93	102	0.87
Transmembrane Helix	103	124	0.92
Non-Cytoplasmic	125	130	0.86
Transmembrane Helix	131	154	0.89
Cytoplasmic	155	162	0.89
Transmembrane Helix	163	185	0.92
Non-Cytoplasmic	186	194	0.89
Transmembrane Helix	195	216	0.92
Cytoplasmic	217	278	0.98
Transmembrane Helix	279	301	0.89
Non-Cytoplasmic	302	316	0.95
Transmembrane Helix	317	339	0.90
Cytoplasmic	340	346	0.91
Transmembrane Helix	347	368	0.92
Non-Cytoplasmic	369	376	0.75
Transmembrane Helix	377	401	0.89
Cytoplasmic	402	413	0.87
Transmembrane Helix	414	435	0.92
Non-Cytoplasmic	436	441	0.77
Transmembrane Helix	442	462	0.97
Cytoplasmic	463	522	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEVLIDPG KTRGHLTSSL LAVAFLSSFG SSMLYGYNLA VVNSPSQYIK DFFNQTIVRR  60
   61 HGSGVDEETL TLMYSFTVSI FAIGGLVGSL TVRMQVTRFG RKGTLVHSTV LVFIAGVLMG 120
  121 FSRLCGSPEM IIVGRFITGI HSGIALSVVP MYLGEIAPKN LRGFLGLVPS IFICIGVFIA 180
  181 QILGLHELLG KEEHWPLFFS LVVVPTFIQL MLLPWFPESP RYLLIEKRNI HATITALKWY 240
  241 RAKGNIQAEV EEMQEEQRSL SSVETVSVLQ LFRDPSVRWQ LVTVIVVNAG MQLSGIDAIW 300
  301 FYTNDIFENA GIPFDQIQYT TVGTGAIEVI AGLIGCFAIE RVGRRPLMIG GFTFMGLCCA 360
  361 GITFSLLLEA HLSFMRYISV ACVVGIIAGF CIGPAGVPFL MTGELFKQSH RPSAYIVGGS 420
  421 LNWISNFAVG FVFPFLQMSA GAFCYLVFCG VCVGVAAYVF FIIPETKNKT FLEISELFAL 480
  481 RNACEIENQS LVTSAQLALK KMNGYGALVT VVDVDKKEKT ET