YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	kqt-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNARYRNIK EKKAAKMTYR AMIYNCLERP TGWKCFLYHF SVFLIVLICL ILSVLSTVEE  60
   61 HSHFAAELLY ILEIVLVVFF SVEFIVRLWS AGCRSKYIGV YGRLKFVRKP ITLIDLVVVI 120
  121 CSLFVICFGT EGQVFAASAM RGIRFLQILR MLHVDRQGGT WRLLGSVVFI HRQELITTLY 180
  181 IGFLGLIFSS YFVYLAEKDH IGVDGRQAFT SYADALWWGV ITMTTIGYGD VVPQTWLGRI 240
  241 VASCFSIFAI SFFALPAGIL GSGFALKVQQ KQRQKHFNRQ IPAAATLIQC LWRCHAAEKK 300
  301 VSATWNAHID PLAHETKETH HWNGKKHASS MDSNNLTRKR QLFKKQSSLV NTFRRKGSPS 360
  361 TDVEMGELQQ ERLLRHERNS DTDDEKRIYR VGADIEIDYE TEEPTTPTRP QGHISHVCEL 420
  421 TDAHRNAIRA IRRVKYFVAR RRFQQARKPY DVRDVIEQYS QGHLNMMVRI KELQRRLDQT 480
  481 LGKPGQYDGK GSRKGHPVTI GSRLSRLELQ MSSLDRKVES SNRTLNALYR LMADRNSLTI 540
  541 SPSPPALISR PVSPAACLSP RDQLSPTSIS SQRSGSPGWQ

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	57	0.93
Non-Cytoplasmic	58	67	0.84
Transmembrane Helix	68	90	0.91
Cytoplasmic	91	110	0.93
Transmembrane Helix	111	130	0.94
Non-Cytoplasmic	131	174	0.66
Transmembrane Helix	175	195	0.94
Cytoplasmic	196	209	0.62
Transmembrane Helix	210	232	0.77
Non-Cytoplasmic	233	240	0.48
Transmembrane Helix	241	266	0.85
Cytoplasmic	267	580	0.61