YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MANEA_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFRRRTCI ILSLFIVFIF SLMMGLKMLW PNAASFGPPF GLDLLPELRP PNTHLENKAD  60
   61 FQRSDRIDME TNTKDLKGAG VTVHPPRASE VNLEELPPLN YFVHAFYYSW YGNPQFDGKY 120
  121 VHWNHPVLEH WDPRIAKNYP QGRHSPPDDI GSSFYPELGS YSSRDPSVIE THMKQMRSAS 180
  181 IGVLALSWYP PDASDENGEA TDYLVPTILD KAHKYNLKVT FHIEPYSNRD DQNMHQNVKY 240
  241 IIDKYGNHPA FYRYKTRMGH SLPMFYIYDS YITKPKTWAN LLTPSGSQSV RGSPYDGLFI 300
  301 ALLVEEKHKY DILQSGFDGI YTYFATNGFT YGSSHQNWNK LKSFCEKNNM IFIPSVGPGY 360
  361 IDTSIRPWNT QNTRNRINGK YYEVGLSAAL QTQPSLISIT SFNEWHEGTQ IEKAVPKRTA 420
  421 NTVYLDYRPH KPSLYLEITR KWSEKYSKER MTYALDQQLP AS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	30	0.80
Non-Cytoplasmic	31	462	0.99