YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54398902
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIGSIIGGV PSLKKLQGAS NDDWIDRLNH VWTVFLMALF AIVVSTGQFV GDPIHCWCPA  60
   61 EFTGAYVDYA KSYCWIKNTY YIPMDTPIPT DHDNRESEEL TYYQWVPLIL LFQAFMFKFP 120
  121 NILWRLFNGG SGINLDKIVD MAEKTQLGSP EDRDKTIDHI SKYMDRWLET HREYHWNALI 180
  181 KAKQTLSRVC CFFCNKRAGT YLTAFYLFIK VVYAANVIAQ FFILNAFLSQ DYNLYGFEVL 240
  241 NMLGSGSEEW KESTRFPRVT LCDFKIRQLQ NIQTWTVQCV LPINLFNEKI FIVIWFWLVL 300
  301 VATLTCLNLV SWLYRVMVKR NRATYIKKYL KINNELHTGF DKKLCQKFAD EYLRDDGVFV 360
  361 IRVIAKNSTD LVATDLVDKM WKLYRAKRMK RNDDEPPAIE PTTEPIDKEK EALKPN

Type	Start	End	Confidence
Cytoplasmic	1	29	0.88
Transmembrane Helix	30	50	0.87
Non-Cytoplasmic	51	101	0.86
Transmembrane Helix	102	122	0.73
Cytoplasmic	123	205	0.94
Transmembrane Helix	206	227	0.88
Non-Cytoplasmic	228	290	0.98
Transmembrane Helix	291	314	0.91
Cytoplasmic	315	416	0.99