YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62203511
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHCESDHRER EDDRQQLICI TNTFFSQTKK KLRGSMMNVT ELITSLTPQT SEYEEYGDFS  60
   61 TTSDYGDTDD GFCPKSKVRE FRMYYEPMLY WMIVILGAIG NTLVVWIYTH FKNRLKAMTD 120
  121 VYLLNLALAD LFFLCTLPFW AADSIYGWAF GSGLCKVVSA VYKINFFSSM FLLTCISVDR 180
  181 YIVIVQTTKA QNSKRSRLLY SKLICVLVWL LAALMSIPEC LFARSKEDDE SNTFCTMVYW 240
  241 NNENNRTKIL VLALQICMGF CIPLVVMIFC YTNIIRTLLK TRNFQKHKAL RVILAVVAVF 300
  301 VLSQLPYNGM LVFEATQAAN MTVTNCTESI RFDIAGQVMK SIAYMHSCLN PFLYAFVGVR 360
  361 FRKDVIRIFQ NIGCVSNLKN SKLAGIPHRS SVMSDTDTTN ALSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	87	0.90
Transmembrane Helix	88	110	0.92
Cytoplasmic	111	120	0.87
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	160	0.81
Transmembrane Helix	161	183	0.79
Cytoplasmic	184	197	0.94
Transmembrane Helix	198	217	0.91
Non-Cytoplasmic	218	248	0.93
Transmembrane Helix	249	272	0.91
Cytoplasmic	273	288	0.90
Transmembrane Helix	289	307	0.92
Non-Cytoplasmic	308	341	0.90
Transmembrane Helix	342	361	0.82
Cytoplasmic	362	404	0.87