YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61402643
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLNFLPVRK FKRNGRYIVF GAVLTVALLA AYLEFRATNE WSSSEVTIRG ESVVWAKAAA  60
   61 AQRSVKEDHF SDENQEKDKW TPKNTQQTWR TEYKGQANLH VFDDWCGSSI AQLRKNLHYP 120
  121 LYPHSRTTVK KLAVSPSWTN YGLRIFGYIH PYTDGDFLFA LASDDNSEFW LSDDDNPDNL 180
  181 KLIAYVGKTG REWTAPGEYG KYASQISDLV PLQANKKYFF ELIHKQNGEG TDHVEVAWQL 240
  241 KVTGSGFAII DSKFISLYTN ESSLRAGDVS HIPQTAASHV TPPPRSLQTP PHGVDMLRPD 300
  301 PRDFFHQIPL LDQVRLHGVL PDCIYNPSYI IKGYPLVRYQ GLQFVYLTYV YPNDYTRLTH 360
  361 MESENKCFYR ANPYYMERYG FSNYIQMDVP EKEELSLKFK GDTMLGKAAN IGRNKDKDFQ 420
  421 KSRENGEKQQ IDKKKKKKKK K

Type	Start	End	Confidence
Cytoplasmic	1	14	0.66
Transmembrane Helix	15	34	0.64
Non-Cytoplasmic	35	441	0.99