YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62202788
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	164	0.99
Transmembrane Helix	165	184	0.89
Non-Cytoplasmic	185	190	0.72
Transmembrane Helix	191	212	0.79
Cytoplasmic	213	232	0.78
Transmembrane Helix	233	253	0.85
Non-Cytoplasmic	254	258	0.60
Transmembrane Helix	259	276	0.89
Cytoplasmic	277	283	0.76
Transmembrane Helix	284	305	0.89
Non-Cytoplasmic	306	312	0.76
Transmembrane Helix	313	333	0.89
Cytoplasmic	334	357	0.82
Transmembrane Helix	358	376	0.83
Non-Cytoplasmic	377	380	0.68
Transmembrane Helix	381	402	0.80
Cytoplasmic	403	412	0.79
Transmembrane Helix	413	431	0.53
Non-Cytoplasmic	432	452	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISWKNMYRTS CSKLTGAWKC LQLDGLVGSS VQQKLFANAS RSHMSARSLI QLCKKNQAEW  60
   61 ITFQHLCFLK RQYVKSSSGL CQRARPRQEP VSAVLDDRDD SMVRQVQQIP ALKPEPGTEV 120
  121 STCATESNQV EPEADRVARL EARQWKEMRV QYSDLPGIYA RLSKLKLTAL VVTTAAAGFA 180
  181 MAPVPFDPVG FLMASLGTGL SSCTANSINQ YFEVPFDSNM NRTKNRPLVR GQISPLHAVS 240
  241 FALACGIPGV TLLTLGVNPL TGFLGALNIF LYTCCYTPLK RLSIANTWVG AVVGAIPPVM 300
  301 GWTAATGSLD PGALLLGAFL FSWQFPHFNA LSWNLREDYS RGGYRMMSVT HPGLCKRVAL 360
  361 RHSVGLIFLS ALGPVLDVTT WTFPLVSLPI NLYISYLAFR FYRHGDRQNS RKLFFCSLWH 420
  421 LPMLLLLALT CKKSRVAQDE AAVTSSSASL AL