YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG12370-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDDLRALV DSLDDASQED LAKVIANFSV DMLQRASALI GAQQGSSGGQ LQNRTLQCQQ  60
   61 QQQREEEQAS LEALASGGKR ILQCPSSFDS VLCWPRTNAG SLAVLPCFEE FKGVHYDTTD 120
  121 NATRFCFPNG TWDHYSDYDR CHQNSGSIPV VPDFSPNVEL PAIIYAGGYF LSFATLVVAL 180
  181 IIFLSFKDLR CLRNTIHANL FLTYITSALL WILTLFLQVI TTESSQAGCI TLVIMFQYFY 240
  241 LTNFFWMFVE GLYLYTLVVQ TFSSDNISFI IYALIGWGCP AVCILVWSIA KAFAPHLENE 300
  301 HFNGLEIDCA WMRESHIDWI FKVPASLALL VNLVFLIRIM WVLITKLRSA HTLETRQYYK 360
  361 ASKALLVLIP LFGITYLLVL TGPEQGISRN LFEAIRAFLI STQGFFVALF YCFLNSEVRQ 420
  421 TLRHGFTRWR ESRNIHRNSS IKNRRHRASK DYSLRSRTES LRLTSTSPIP TGHYE

Type	Start	End	Confidence
Non-Cytoplasmic	1	161	0.98
Transmembrane Helix	162	186	0.90
Cytoplasmic	187	199	0.82
Transmembrane Helix	200	220	0.92
Non-Cytoplasmic	221	237	0.76
Transmembrane Helix	238	259	0.81
Cytoplasmic	260	268	0.85
Transmembrane Helix	269	290	0.94
Non-Cytoplasmic	291	319	0.95
Transmembrane Helix	320	342	0.89
Cytoplasmic	343	361	0.89
Transmembrane Helix	362	382	0.90
Non-Cytoplasmic	383	393	0.86
Transmembrane Helix	394	414	0.93
Cytoplasmic	415	475	0.97