YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8916-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVSLVPFI IIGFMAHFCA CEDVTSSDLL YIKTMGPSAI LTKMPNITNE FSSRIFSSFR  60
   61 ILPSSKPKTN GSLKRSQNAT NLSYSSSEIS NQRRVRRKAA ADMLSRNISM ILENLLKRYE 120
  121 QSQLPTHGQG VPTVVQTNIL IRSMGPVSEL DMDYSMDCYF RQYWRDKRLS FKGPIKSLSL 180
  181 SIKMLDKIWR PDTYFYNGKH SQIHMITVPN KLLRLDQNGG ILYSMRLTIK ATCPMELQNF 240
  241 PMDRQSCPLV IGSYGYINQQ LIYEWKNQDD AVSFVPGMTL NQFDLISMMH RNFTTVRREG 300
  301 DFSVLHVAFN LKRHTGYFLI QVYVPCILIV VLSWVSFWIH REATSDRVSL CVTSVLTLST 360
  361 ISLDSRTDLP KVKYATALDW FLLMSFLYCI ATLLEFAGVH YFTKLGSGES PQLEDQWEDI 420
  421 CIANSLSDHA GEVDGDGEAD ADPFADEDSS NGSENDDNEA GASESVESKS GVCVCNKNDA 480
  481 LGLEYEVSLQ NSLAGAGFLK RNAIFCPTYN DPSYILPNTM ERTTQTEPPA VSRLHQMWMC 540
  541 LKSDNSFRKQ RERNAAAQKS EQGGANCYVN SVSLIDRVAR IAFPMSFAFL NLLYWWAYGM 600
  601 YKKEFSWSNM KS

Type	Start	End	Confidence
Signal Peptide	1	21	0.86
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	316	0.94
Transmembrane Helix	317	338	0.91
Cytoplasmic	339	379	0.56
Transmembrane Helix	380	402	0.82
Non-Cytoplasmic	403	577	0.49
Transmembrane Helix	578	599	0.80
Cytoplasmic	600	612	0.42