YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66771981
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVDELKRLYR IVARIWLFIR RYKAIIILAV FLAYRIFNFK PDPSKRTASL AGWSRDAPRS  60
   61 VADYLDPTKD TALIVPRHFC RSKALLTIAV CSYVHHFERR RAIRKLWGNF TDFNYSVFVK 120
  121 LHGHLKGRYQ DVLPERLKLY SEYLSGEGDS LRASIRLVFI VGRRNLASLL ENEAVAIEAQ 180
  181 KYNDVIQENF IDTYNNLTIK AVMALKHITQ SCLNTTAFYF KCDDDTFVNV PNILHFLLGG 240
  241 TIPVNVVTAG FHYGNTYEVT SPRKRLTARR EMMYGRQHCN VPPATNKLNK WYMPSYMFRG 300
  301 GVYPRYLCGS GYLLSIDVVP RLYKASLGTR IVHLEDMFVT GLCAEKAGIK RTNHPLFRSS 360
  361 YPYEGDEQCA LKGSFTVHRA KDNVMWEAWY RVTNFSSKCP PPQKDFHLRL PKMQRC

Type	Start	End	Confidence
Cytoplasmic	1	18	0.88
Transmembrane Helix	19	37	0.89
Non-Cytoplasmic	38	416	0.95