YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63101731
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSLQSSVMSL FSLLLFFSLA AHTGAFDLGQ TTRCVPIPPQ MSVCQDVPYS EMRLPNLLGH  60
   61 GSLEEAAPRS DDLRTLLHTG CHPQARAFVC SLIAPVCLDR FIQPCRSVCL AVKESCSPVL 120
  121 ACHGHSWPES LNCERFPEQD DCLTPLPKHI SAFSKEFPQP ACQSCPSVQE SPSLKTLLDS 180
  181 LCLNDFAVKV KIMRRRVPSS EPEFTVEGAV ELIERGPLMP YDTASLLQRW MLINLRCAHA 240
  241 LVRPGRAQLY LITGKMRAGG SIEIANLFPW LKKDLHIATA TRKWKHYKC

Type	Start	End	Confidence
Cytoplasmic	1	6	0.56
Transmembrane Helix	7	26	0.60
Non-Cytoplasmic	27	289	0.94