YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145553955, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEITNIRPS FDVSPVAAGL IGASVLVVCV SVTVFVWTCC HQQAEKKHKT PPYKFIHMLK  60
   61 GISIYPETLS NKKKIIKVRR DKDGSHRESG RGNLLVNAES GLLSHDRDPR GPSPASCIDQ 120
  121 LPIKRDYGEE LRSPMTSLTP GESKPTSPSS PEEDVMLGSL TFSVDYNFPK KALVVTIQEA 180
  181 HGLPVMDGQT QGSDPYIKMT ILPDKRHRVK TRVLRKTLDP VFDETFTFYG IPYSQLQDLV 240
  241 LHFLVLSFDR FSRDDVIGEV MVPLAGVDPS TGKVQLTRDI IKRNIQKCIS RGELQVSLSY 300
  301 QPVAQRMTVV VLKARHLPKM DITGLSDPYV KVNVYYGRKR IAKKKTHVKK CTLNPIFNES 360
  361 FIYDIPTDLL PDISIEFLVI DFDRTTKNEV VGRLILGAHS VTTSGAEHWR EVCESPRKPV 420
  421 AKWHSLSEY

Type	Start	End	Confidence
Cytoplasmic	1	15	0.46
Transmembrane Helix	16	38	0.81
Non-Cytoplasmic	39	429	0.63