YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63100721
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDFSSLGKL LESAQEHSTV VGKVWLTVLF IFRILVLSAA AEKVWGDEQS GFTCDTKQPG  60
   61 CQNVCYDVTF PISHIRFWVL QIIFVSTPTL IYLGHILHLV RMEQKLKSNE TSGADKQALL 120
  121 GHKPKGPIRD EQGKICLKGV LLRTYVFNII FKTLFEVGFI VAQYFLYGFE LKPLYTCSRW 180
  181 PCPNTVNCYI SRPTEKTIFI IFMLAVACVS LLLNLVEMYH LGFTKCRQGL RYRRAHSVCD 240
  241 TESKVPSEDV VVPFVPNYPY FPAHAPPPAS FPTEPHFNPS EPDGTFPVHN SRSVYKQNRE 300
  301 NMAVERNGKP DTADVKISKT VSSVPGSPSS QQRRPSHSSR YSSNKTRMDD LNLSRRKRES 360
  361 LDSITECGIS RSEQLKRFPL PLTGNGRTMR FIYRGVI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.92
Non-Cytoplasmic	42	76	0.96
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	144	0.96
Transmembrane Helix	145	166	0.70
Non-Cytoplasmic	167	198	0.75
Transmembrane Helix	199	223	0.87
Cytoplasmic	224	397	0.78