YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAG3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQDLFLDLL LLQLLWEAPV VSSGPGKELS VVWAQEGAPV HLPCSLEFPH LDPNFLRRGW  60
   61 VTWQHRPDSD QPASIPALDL LQGMPSTRRH PPHRYTVLSV APGGLRSGRQ PLLSHVQLEK 120
  121 RGPQRGDFSL WLRPATRKDA GEYHAFVRLP DRDFSCSLRL RVGQASMIAS PPGTLKPSDW 180
  181 VILNCSFSRP DRPVSVHWFQ GQSRVPVHNS PRHYLAESFL LLPQVSPLDS GTWGCVLTYR 240
  241 DGFNVSITYN LKVQGLEPVA PLTVYAAEGS RVELPCHLPP VVGTPSLLIA KWTPPGGGPE 300
  301 LPVTGKSGNF TLQLENVGRA QAGTYTCSIH LQGRQLSAAV TLAVITVTPK SFGLPGSPQK 360
  361 LLCEVVPASG EGRFVWRPLS DLSRSSLGPV LELQEAKLLA EQWQCQLYEG QKLLGATVYT 420
  421 AESSSGAWSA KRISGDLKGG HLFLSLILGA LALFLLVTGA FGFHLWRRQL LRRRFSALEH 480
  481 GIRPPPVQSK IEELEREPET EMEPETEPDP EPQPEPELEP ESRQL

Type	Start	End	Confidence
Signal Peptide	1	23	0.91
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	441	0.99
Transmembrane Helix	442	466	0.90
Cytoplasmic	467	525	0.97