YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63334145, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	30	0.46
Non-Cytoplasmic	31	43	0.46
Transmembrane Helix	44	65	0.84
Cytoplasmic	66	72	0.46
Transmembrane Helix	73	92	0.88
Non-Cytoplasmic	93	96	0.40
Transmembrane Helix	97	120	0.79
Cytoplasmic	121	133	0.47
Transmembrane Helix	134	156	0.86
Non-Cytoplasmic	157	162	0.44
Transmembrane Helix	163	183	0.93
Cytoplasmic	184	512	0.52
Transmembrane Helix	513	528	0.46
Non-Cytoplasmic	529	563	0.89
Transmembrane Helix	564	584	0.93
Cytoplasmic	585	594	0.82
Transmembrane Helix	595	616	0.91
Non-Cytoplasmic	617	621	0.78
Transmembrane Helix	622	645	0.89
Cytoplasmic	646	657	0.85
Transmembrane Helix	658	678	0.89
Non-Cytoplasmic	679	687	0.69
Transmembrane Helix	688	709	0.94
Cytoplasmic	710	740	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGAVLVAIA AAIGNFLQGW DNATIAGAIV YIKKELDLES TVEGLVVAMS LIGATLVTTC  60
   61 SGAISDWIGR RPMLIVSSML YFISGLIMLW SPNVYVLLIA RLLDGFGIGL AVTLVPIYIS 120
  121 ETAPADIRGS LNTLPQFTGS GGMFLSYCMV FGMSLLSSPS WRLMLGILSI PSLLYFALTV 180
  181 FYLPESPRWL VSKGRMVEAK KVLQRLRGRE DVSAEMALLV EGLGIGGETS IEEYIIGPTG 240
  241 ELTEDQDPDA VKDQIKLYGP EAGLSWVAKP VPGGQSTLSL VSRQGSLATQ TLPLMDPLVT 300
  301 LFGSVHEKLP ETGSMRSMLF PNFGSMFSTA DPQIKTEQWD EESLQREGED YASDGGGDSD 360
  361 HDLQSPLISR QTSSMEKDMV PPPSHSSIMS MRRHSSLMQG TAGEAAGGMG IGGGWQLAWK 420
  421 WSEREGEDGK KEGGFKRIYL HEEGVPGSRR GSLVSLPGGD VPAEGDYIQA AALVSQPALY 480
  481 SKELMDQDPV GPAMVHPAET ASRGPMWAAL LEPGVKHALF VGAGIQILQQ FSGINGVLYY 540
  541 TPQILEEAGV EVLLESLGLG TESASFLISA FTTLLMLPCI VVAMKLMDIV GRRRLLLTTI 600
  601 PVLIVTLLVL VIGDLVTTTT VIHAAISTAC VIIYFCCFVT AYGPIPNILC SEIFPTRVRG 660
  661 LCIAICALVY WIGDIIVTYT LPVMLTSIGL TGIFGIYAVV CVISWVFVFL KVPETKGMPL 720
  721 EVIAEFFAVG ARQVTAAKND