YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34499919
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKVQILLF LFIFNSFSLC LYFIHHPSFL NPTPSPNPDI KIFTKDSPFR RPFIEKHKTH  60
   61 ILKPWPILPS YSPWSQPSNS TPLRSCEGYF GNGFTRLVDV FSSRAEGRGG GWFRCWYSET 120
  121 LRSSVCEGGR VRMVVERIKM AKGGESLGDV IGRSEDEELP LFEDGAFEVD GGVGFKGGKM 180
  181 VVDEGFLDRY VPRGEIMRHT MRDLIGKMKV VGRKEFKCDK WIEEPTLLVT RFEYANLFHT 240
  241 VTDWYSAYVS SRVTGLPSRP HLIFVDGHCK APLEETWKAL FSSVRYAKNF TGTVCFRHAI 300
  301 LSPLGYETAL FKGLTEDIFC DGASAQELWR KPDNEKTARI SEFGEMIRAS FGLPLNLNHV 360
  361 GKPIFGGHNA LFVRREDYLA HPRHGGKVES RLTNEAEVFE SLKSWAANYK GCKINLVNGL 420
  421 FAHMSMKEQV RAIQDASVII GAHGAGLTHI VSALPKTVIL EIISSQFRRP HFAYIARWKG 480
  481 LEYHAINLDG SYANPETVIN ALVSIMKSLR C

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	26	0.73
Non-Cytoplasmic	27	511	0.98