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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50512392, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQRNLSER TKLVLLFLWM PWESAARQIR YSVPEELEKG SFVGNISKDL GLEPRELAER  60
   61 GVRIISRGRQ LFSLNPRGGS LVTAGRIDRE ELCAQIAPCV VSFNILVEDR VKLFGIEIEV 120
  121 TDVNDNAPKF QAETLDVKIN ENVAPGMRFP LPEATDPDVD VNSLQSYQLS PNKHFSLVVQ 180
  181 SGAKGIKYPE LVLERALDRE EEAIHHLVLV ASDGGNPPRS GTVLITVTVF DANDNAPIFT 240
  241 STEYRVNVPE NLPVGTRLLK VTATDKDEGA NGEVTYAFRQ SLDAQLSKFQ LDKNTGEIKL 300
  301 SENLDYEERR FYEIEIQAED GGAYLATAKV LITVEDVNDN SPEVTITSLF SPVTEDSPVG 360
  361 TVIALLNVHD LDSGQNGEVT CSISGNLPFK LEKSIDSYYR LVTQTALDRE QVPSYNITVT 420
  421 ATDGGNPPLS TKAHFTLQVA DINDNPPTFS HTSYLTYIPE NNPRGASIFS VTALDPDSKE 480
  481 NAQILYSLAE DTIEGAPLSS YISINSDTGI LYALWSFDYE QFRELQVQVT ASDSGKPPLH 540
  541 SNVSLTLFVL DQNDNSPEIL YPTMPTDGST GVELAPRSAE LGYLVTKVVA VDRDSGQNAW 600
  601 LSYRLLKASE PGLFTVGLHT GEVRTARALM ERDALKQNLV VAVQDHGQPP LSATVTLTVA 660
  661 IADSIPDVLA DLSNLEPPKD SEASSLTLYL VVAVAAVSCI FLAFVIVLLA LKLRRWHKSH 720
  721 MLQSSRDELP GVPASHYVGV DGVRAFLQTY SHEVSLTADS RKSHLIFPQP NYADTLISQE 780
  781 SCEKKDPLSL LDDSKCPVED APLVPQAPPN TDWRFSQAQR PGTSGSQNGD ETGTWPNNQF 840
  841 DTEMLQAMIL ASASEAADGS STLGGGTGTM GLSARYGPQF TLQHVPDYRQ NVYIPGSNAT 900
  901 LTNAAGKRDG KAPAGGNGNK KKSGKKEKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle