YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62955355, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGGVMHFI CLMKSHAAYG RYVDTSGSSM MVPARLAWFL QEIPALLVPL LLMVTTDGNH  60
   61 GTGKHLMLWT FCLHYFQRSC IYSLLTKGRP YPFNIMLTGV VVCSINGFLQ AHYLLHCATF 120
  121 HNTWFSDACL LTGLIIFFLG MGINIHSDHI LRNLRNPGEI SYKIPRGGMF EYVSGANFFG 180
  181 EIVEWLGYAV ATWSLPTFAF AFFTICFIGP RAYHHHK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.82
Transmembrane Helix	36	56	0.76
Non-Cytoplasmic	57	64	0.62
Transmembrane Helix	65	82	0.55
Cytoplasmic	83	92	0.56
Transmembrane Helix	93	114	0.91
Non-Cytoplasmic	115	123	0.61
Transmembrane Helix	124	146	0.89
Cytoplasmic	147	166	0.61
Transmembrane Helix	167	183	0.56
Non-Cytoplasmic	184	188	0.51
Transmembrane Helix	189	213	0.81
Cytoplasmic	214	217	0.81