YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62955517, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVAGLVSLT ILYCWSSTPN NCPAPLPNPK QQESYSAKKS DSLTGTAEDK PILLLWFWPE  60
   61 NYFFDFSDCK TIFNIDGCHL TDNRSLYDTS DAVLIFHKAI SWDLTNLPQS PRPRFQRWIW 120
  121 FHVESPTNTR KIPGLENLFN LTLSYRHDAD TLVRWRVRTR KKPEEDFVIP KKDKLVCWIV 180
  181 SNNAASTGVG TRNKFYEEFS KHIQVTMFGK AYANFLDFNE YFPTLASCKF YLSFENSIHK 240
  241 DYFTEKINGP LAVGTVPVVL GPPRKNYENF VPGDAFIHVE DFQDPKSLAE YLLQLDKDDV 300
  301 AYRRYFNWRK HLTATPHLIQ QTQEFILPIC TACDYIARHR EYKEAHDIYD WYFN

Type	Start	End	Confidence
Signal Peptide	1	16	0.71
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	354	0.99