YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220673066, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCQENTVHF GSWAFVVGGL LYLLKQLTTQ TAYGRYVDTK SPGLMVPARA GWFIQELPSF  60
   61 LVPVLLFFAT ESLPGVGKHI LFWTFCLHYF QRTFVYSLLT KGRPSPLHIV VSAVVFCSIN 120
  121 GFLQGHYMLH CTQYSSDWLT DTRFITGLLV FLCGMAINIH SDYILRNLRK PGEVSYKIPR 180
  181 GGLFELVSGA NFFGEIVEWC GYAVASWSFP AFSFALFTIC SIGPRAYHHH RYYLEKFKDY 240
  241 PKSRKAVIPF LL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.41
Transmembrane Helix	7	28	0.67
Cytoplasmic	29	49	0.54
Transmembrane Helix	50	70	0.72
Non-Cytoplasmic	71	75	0.49
Transmembrane Helix	76	96	0.63
Cytoplasmic	97	106	0.76
Transmembrane Helix	107	127	0.92
Non-Cytoplasmic	128	143	0.79
Transmembrane Helix	144	164	0.89
Cytoplasmic	165	180	0.78
Transmembrane Helix	181	197	0.79
Non-Cytoplasmic	198	206	0.51
Transmembrane Helix	207	228	0.81
Cytoplasmic	229	252	0.93