YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62204858, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTALSLVRA LLPLVCSAVL CSAIGPPMLS SYAKTEDKLF KHLFSNYQKW VRPIEDLNTT  60
   61 IQVKFGLAIS QLVDVDEKNQ LMTTNVWMKQ EWTDLKLRWD PDHYLGITSI RVPSDSIWIP 120
  121 DIVLYDNADG NFEATVTKAV VRFDGTISWT PPANYKSACT IDVTFFPFDL QNCSMKFGSW 180
  181 TYDGSQVDIL LEDVHVDKRD YFDNGEWEIV KATGNRGLRR DGTFFYPSIT YSFIIRRLPL 240
  241 FYTLFLIIPC IGLSFLTVLV FYLPSNGGEK ISLCTSVLVS LTVFLLVIEE IIPSSSKVIP 300
  301 LIGEYLVFTM IFVTLSIVIT VFAINIHHRS SSTHHSMAPW VRRIFLHHLP RLLCMRSHVD 360
  361 RYATSAGTRT GGLGYGKSLS QDTNQLDAEH NLQAALESIR YITRHVVKEN EVREVVQDWK 420
  421 FVAQVLDRVF LWAFLLVSLL GSALLFIPVI YKWASIIVPS YAEITS

Type	Start	End	Confidence
Signal Peptide	1	33	0.91
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	239	0.99
Transmembrane Helix	240	263	0.92
Cytoplasmic	264	270	0.92
Transmembrane Helix	271	292	0.90
Non-Cytoplasmic	293	304	0.83
Transmembrane Helix	305	326	0.92
Cytoplasmic	327	428	0.98
Transmembrane Helix	429	451	0.94
Non-Cytoplasmic	452	466	0.94