YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891368, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRIRPSSK RCTVIGGSGF LGRHLVERLV DRGYTVNVFD IRQAYELPGV TFYQGDLCDK  60
   61 LALVMALKEV SIVFHCASPA PGSDDGALFQ RVNIDGTRTV IQACHEAGVQ KLILTSSASV 120
  121 VFEGTDIKNG KEDLPYAKKP IDYYTETKIK QEKLVLEACS KEKGFLTVAI RPHGIFGPRD 180
  181 PQLVPILVDT ARRGKMKFII GDGSNLVDFT YVENVVHGHI LAAEHLKADS PLCGQAYHIT 240
  241 NDEPVRFWDF MSQILVGLGY SAPRYHLPYA LVYGIALLLW FISLILRPLI QFKPTFSPMR 300
  301 VALAGTHHYY SCARAKQDMG YRPLVPLQEA VVRTVESYPH LRNGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	268	0.55
Transmembrane Helix	269	290	0.88
Cytoplasmic	291	345	0.69