YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182890784, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSYPLPEG FSEFDVFSLG SCLLVEGLLG FFLNAVTVIA FLKIRELRTP SNFLVFSLAM  60
   61 ADMGISTNAT VAAFSSFLRY WPYGSDGCQT HGFQGFMTAL ASIHFIAAIA WDRYHQYCTR 120
  121 TKLQWSSAIT LVLFTWLFTA FWAAMPLFGW GEYDYEPLRT CCTLDYSKGD RNYVSYLIPM 180
  181 SIFNMGIQVF VVLSSYQSID KKFKKTGQAK FNCGTPLKTM LFCWGPYGIL AFYAAVENAT 240
  241 LVSPKLRMIA PILAKTSPTF NVFVYALGNE NYRGGIWQLL TGQKIESPAI ENKSK

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.96
Transmembrane Helix	17	42	0.86
Cytoplasmic	43	52	0.89
Transmembrane Helix	53	74	0.92
Non-Cytoplasmic	75	91	0.84
Transmembrane Helix	92	111	0.93
Cytoplasmic	112	124	0.81
Transmembrane Helix	125	145	0.91
Non-Cytoplasmic	146	175	0.92
Transmembrane Helix	176	196	0.90
Cytoplasmic	197	216	0.87
Transmembrane Helix	217	236	0.68
Non-Cytoplasmic	237	295	0.57