YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62955771, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIISIHWTA CVSLEQTKQG HSSLSSVSGS AEASSISTSS RLKYASLGVL VFQTTTLVLT  60
   61 MRYSRTLHTE EPLYLASSAV VCAELLKIVA CILLVFRDHS FSVRSLNLVL KEEIINRPLL 120
  121 TLKLAIPSGI YTLQNNLLYV ALSNLDAATY QVTYQLKILT TALFSVSMLG KRLGIYQWLS 180
  181 LVILMIGIAL VQWPTEVSSS TGEKDLTASS QLIGLLAVLV ACFSSGFAGV YFEKILKESK 240
  241 QSVWVRNIQL GLFGLVFGFG GVFTYDRERV LENGLFQGYN NVTWSVVALQ ALGGLVIAAV 300
  301 IKYADNILKG FATSISIILS TLISYFLLDD FDPTSVFFLG AMLVIAATFL YGCERTPAIC 360
  361 TSKV

Type	Start	End	Confidence
Cytoplasmic	1	43	0.92
Transmembrane Helix	44	63	0.79
Non-Cytoplasmic	64	72	0.74
Transmembrane Helix	73	96	0.81
Cytoplasmic	97	173	0.92
Transmembrane Helix	174	193	0.94
Non-Cytoplasmic	194	211	0.87
Transmembrane Helix	212	232	0.95
Cytoplasmic	233	242	0.93
Transmembrane Helix	243	265	0.90
Non-Cytoplasmic	266	281	0.93
Transmembrane Helix	282	301	0.94
Cytoplasmic	302	309	0.72
Transmembrane Helix	310	328	0.96
Non-Cytoplasmic	329	334	0.86
Transmembrane Helix	335	353	0.96
Cytoplasmic	354	364	0.92