YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62955571, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYTAGSYTA KSYADKSYAD KSYADKSYAY TGYTDEKSAQ EAYDEQLKKE KRKRRDSMCC  60
   61 EVVALIIGFV GLIGVAAVTG LPMWKVTAFI QENIIVMETR WEGLWMNCYR QANIRMQCKV 120
  121 YDSLLYLPPD LQAARGLMCS SVALTAIGCI VATVGMRCTR LVDSRPKVKH IVLVSGGCLF 180
  181 LAGCLTTIIP VSWTAHVIIQ DFYNPLLIDA QRRELGEALY VGWVTSALLF IAGVILLCRH 240
  241 APRTQAKEDM ATVLYRAGSA PYNYSYAPGY GYQPPYGYQP GYTYQPTYSP VPPTVYSQPR 300
  301 Y

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	81	0.90
Non-Cytoplasmic	82	132	0.98
Transmembrane Helix	133	156	0.90
Cytoplasmic	157	170	0.90
Transmembrane Helix	171	194	0.89
Non-Cytoplasmic	195	218	0.89
Transmembrane Helix	219	238	0.95
Cytoplasmic	239	301	0.96