YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60688435
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGTAVTVGDS AEARMQPLDS MEDGEMEVSG SRYSIKSSRL RPNSGIKSLA GCLGHNQAPL  60
   61 VLQLLSFLFL AGLLLIILFQ VFKTTNTQWQ EEPKQEKILE ELNQLTDELM SRIPISQGQN 120
  121 ESMQEKISEQ LTQLKVELLS RIPVFQVQNE SMQEKISEQL TQLKAELLSK IPSLQVQDES 180
  181 KQEKIYQQLV QMKTELLRLC RLCPWDWTFL LGNCYFLSKS QRNWNDAVRA CKEEKAQLVI 240
  241 INSDEEQTFL QLTSKAKGPT WMGLSDLKNE ATWLWVDGST LSSRFQKYWN RGEPNNIGEE 300
  301 DCVEFAGDGW NDSKCELKKF WIFKKSATAC TEG

Type	Start	End	Confidence
Cytoplasmic	1	59	0.89
Transmembrane Helix	60	82	0.88
Non-Cytoplasmic	83	333	0.91