YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182888856, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGMQILG VALSFVGTLG SIITCVLPMW RVTAFIGNNI VTAQMIWEGL WIVCVVQSTG  60
   61 QMQCKLYESM LALEPDLQAA RALLVVSILL SILAVLLAVV GGKCTTCIEN KSAKARVVVS 120
  121 AGVIFLLSGL LCLTPVCWTA HNTIRDFYNP LLQDAQRREL GAALYTGWGS AGLMLIGGAI 180
  181 LCCQCPAKDQ RAFVAKYPAP KSNGSDKEFV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.54
Transmembrane Helix	8	30	0.90
Non-Cytoplasmic	31	78	0.69
Transmembrane Helix	79	101	0.91
Cytoplasmic	102	116	0.84
Transmembrane Helix	117	140	0.90
Non-Cytoplasmic	141	161	0.91
Transmembrane Helix	162	183	0.89
Cytoplasmic	184	210	0.91