YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62912498, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWEFRSMMFW RAVFAEFFGT MFFVFFGMGA ALRWTTGPYH VFHTALCFGF AAATLIQSIG  60
   61 HISGGHINPA VTFAYLVGSQ MSVFRAFFYI CAQCLGAMAG AAALYGVTPN NMRGTMALNT 120
  121 LQPGMSLGMA TTVEVFLTMQ LVVCVFAVTD ERRNGRLGSA ALSIGFSVTM GHLMGMYYTG 180
  181 AGMNPARSFA PAVITRNFIN HWVYWVGPMI GAAMGAIFYD FFLFPRMRGF SERLATLKGS 240
  241 RPPEAENQQE TRGEPIELKT QTL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.82
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	40	0.80
Transmembrane Helix	41	65	0.82
Cytoplasmic	66	85	0.82
Transmembrane Helix	86	107	0.93
Non-Cytoplasmic	108	126	0.91
Transmembrane Helix	127	148	0.93
Cytoplasmic	149	156	0.88
Transmembrane Helix	157	180	0.87
Non-Cytoplasmic	181	201	0.94
Transmembrane Helix	202	223	0.94
Cytoplasmic	224	263	0.98