YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60592456
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.96
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	45	0.95
Transmembrane Helix	46	66	0.94
Cytoplasmic	67	78	0.82
Transmembrane Helix	79	99	0.96
Non-Cytoplasmic	100	120	0.92
Transmembrane Helix	121	144	0.86
Cytoplasmic	145	202	0.97
Transmembrane Helix	203	222	0.88
Non-Cytoplasmic	223	230	0.73
Transmembrane Helix	231	251	0.84
Cytoplasmic	252	259	0.80
Transmembrane Helix	260	281	0.94
Non-Cytoplasmic	282	296	0.77
Transmembrane Helix	297	318	0.84
Cytoplasmic	319	330	0.82
Transmembrane Helix	331	350	0.91
Non-Cytoplasmic	351	353	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEFQKNDLL SFFCILLLLP ALASAKCTCD TEEEGSNRSE ALKYKLGAIA SILVAGAIGV  60
   61 CIPIIGKTIP SLQPEKPIFF IIKAFAAGVI LATGFIHVLP DAFERLTSPC LKENPWANFP 120
  121 FTGFVAMMAA IGTLMVDSIA TSYFNRSHFK KAQNHVNGDE EKVGEHEGHV HVHTHGTHGH 180
  181 SHGSLDTNSA ESQLLRHRVI SKVLELGIVV HSVIIGISLG ASESPATVRP LVAALTFHQF 240
  241 FEGMGLGGCI AQARESQLTT IIMVLFFSLT TPVGIGIGIG ISSRYEENSP TALILEGLFD 300
  301 AASAGILIYM ALVDLLAADF MNPKMQKNIK LQVGANVSLL FGAGCMSLIA KWA