YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|133777408, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.86
Transmembrane Helix	103	124	0.78
Non-Cytoplasmic	125	128	0.73
Transmembrane Helix	129	149	0.90
Cytoplasmic	150	155	0.73
Transmembrane Helix	156	175	0.86
Non-Cytoplasmic	176	182	0.64
Transmembrane Helix	183	203	0.91
Cytoplasmic	204	212	0.68
Transmembrane Helix	213	232	0.86
Non-Cytoplasmic	233	276	0.74
Transmembrane Helix	277	291	0.56
Cytoplasmic	292	292	0.34
Transmembrane Helix	293	314	0.80
Non-Cytoplasmic	315	321	0.37
Transmembrane Helix	322	342	0.92
Cytoplasmic	343	346	0.39
Transmembrane Helix	347	368	0.75
Non-Cytoplasmic	369	370	0.48
Transmembrane Helix	371	392	0.75
Cytoplasmic	393	465	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGTHLTKKS DPLNVTHLCK TSTSTQYSSA QNTKELQPLM ANPVHKITDE KKQQGLEKIN  60
   61 SGQRFKANLI KWVSFISGDM AAFGEWMKGQ FILLQIMDWV LRGAAQVMFV NNPLSGLIIF 120
  121 AGLILQNRWW ALNGFVGTVF ATISALILCQ NRGAIAAGLY GYNGILVGLL MAVFSNAGDW 180
  181 YWWLLLPNIF MSMACPIVSS ALASINSRWD LPVFTLPFNI LVCLHMVATG HYNQYFPQIL 240
  241 IQPTTSMSNL TWSELDYAQL FRSIPVGIGQ VYGCDNAWTG GIFMIALFIS SPITFAHATI 300
  301 GSAVGMVSGL ALAAPFKNIY MGLWGYNCVL ACIAIGGMFY ALTWQTHLLA VACAFFCAYL 360
  361 GSAIGNVMSN FGLPACTWPF CLSALTFLLI TTETKFIHKL PLAKVAYPEQ NLRYYWKMKK 420
  421 EEKTQKGIQA KDTESQLEKE QISISMEKKD LDICTVDVQQ EENTL