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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47606666, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWILAIIFFQ CILNVLSEDL HSSLYFVNAS LQEVVFASTT GTLVPCPAAA VPPATLRWYL  60
   61 ATGEESYNVP GIRHVHPNGT LQIFHFPPSS FSKVIHDNTY YCTAENPSGK IRSQDVHIKA 120
  121 VLREPYTVRV ADQTAMRGSV AVFKCIIPSS VENYITVVSW ERDTVPLVSG ARFLITSTGA 180
  181 LYILDVQKED ELFNYRCMTR HRYTSETRQS NSARLFVPDP SNSAPAILDG FEKREVMASH 240
  241 RVELPCKASG HPAPKYRWLK NNRPLESDSR FRQSVTGLLI ERAQPSDTGS YVCEVWNSYG 300
  301 NAEVIGRLTV KEPLKAVVSP RKVKGSVGSQ VSLSCSVTGS DEFELSWYRN GDKINTGANI 360
  361 RMNGINKENL VMDGMAKSDG GVYQCFSRKA KMSAQDFVQV ILEDGTPKIL SAFSEKVVGP 420
  421 NDFVSLTCHV KGTPQPAITW TLDDEVVAKD SRHRIVHSIT AEGNVVSYLN ISHIQVRDSG 480
  481 VYRCTCNNSA GTVSYQARIN VRGSADIRPM KNLTAIAGWD MYIHCHVIGY PYYSIKWFKN 540
  541 SNLLPFNDRQ RAFENNGTLK LLNVQKELDE GEYSCHVQVQ PQLFKNQSVH VTVKVPPFIQ 600
  601 PFEFPRYSIG HRVFVPCVVR SGDLPISITW EKDGKSINAS LGVTIDNIDF TSSLRISNLQ 660
  661 RVHNGTYTCI AQNDAAVVKY QSQLIVRVPP RFKVQPQDQD GIYGKSVILN CSADGEPRPT 720
  721 IEWKYSKGAG VPQFQPIALN SGFRVQLLGN GSLLIKHVLE EDAGYYLCKV SNDVGADVSK 780
  781 SMYLNVKIPA MITSYPNNSL ATKGEKIEMS CKAHGEKPIM VRWEKEVEKE KQSHMINPDM 840
  841 WRHTVTVKNV GDEVVSTLQI YPTMREDSGF FSCHAINSYG EDRGILQLTV QEPPEPPKVE 900
  901 IREVKERTIA LRWTMGFDGN SLITGYDIEC KNKTETWERA RRTRDVSPTL NQATIIELHP 960
  961 SSTYNIRMFA KNHIGDSEPS NELTVTTDEA DPEGPPQDVT LEAITSQSIK VTWKAPLKHL1020
 1021 QNGVIRGYQV CHREHSTNGS HQFVCISVEA TGETESLSLN NLKKFAEYEV VVQASNSAGP1080
 1081 GPASSEVRAT TMEDVPSRAP EKVVATAASP ESISLSWQTP AREALNGVLQ GFRIIYWANL1140
 1141 PDGELGEIRN VTTHKAPLEL EGLEKYTNYS IQVLAFTRAG DGVRSDQIYI RTKEDVPGPP1200
 1201 GGVKAAAASS SVVYVSWLPP LKLNGVIRKY TVFCSSTSPT VVSEFEVAPD EFLHRVHNLS1260
 1261 RNRKYNIWVM AVTAAGRGNS SDVITVEPLA KAPAKILTFS GTVTTPWMRD VVLPCRAVGD1320
 1321 PPPAIKWLKE SGSPAPAVID GRRSIHGNGS FIIKTVKAED SGYYTCVASN NYGTDEIILN1380
 1381 LQVQVPPDQP RLTVTKTTTT SITVTWTPGD NGGSSIRGYI LQYSEDNSEK WGSISISPSE1440
 1441 RSYRLENLNC GTWYKFTLTA QNAVGPGRIS EIIEAKTHGK EPQFSKEQEL FTSINGTSVK1500
 1501 LNLIGWNDGG CPITSFTLEY RPLESPVWTK AKRTSLSKSY NLLDLQEATW YELQMKVYNS1560
 1561 AGLAEKRVKF ATLSYDGSTI PPLVKTLVKD PVKKTSNEGM KMMVTISCIL VGMVLLFVLL1620
 1621 MVLRRRRREQ RLKRLRDAKS LAEMLMSKNT RPSDTMNKQQ QTLRMHIDIP RAQLLIEERD1680
 1681 TMETVDDRST VLLTDNDFGE TAKQKSATVT HSVHYQSLSQ ATGPLVDVSD VRPGTSKSSL1740
 1741 SNPTSRRTAK AGPAARNRYA SQWTLNRPHP PVSVHTLSTD WRLGTPRVAG SVDKESDSYS1800
 1801 VSPSQDTDRA RSSMVSTESA SSTYEELARA YEHAKMEEQL RHAKFTITEC FISDTSSEQM1860
 1861 TAGTNDYTDS LTSSTPSESG ICRFTASPPK PQDVCRVINM AVPKAHRPGG ELVHLPPYLR1920
 1921 MDFLLNRGVS GTSREAAMGQ ACLEPQKTRS LKRPALLEPT PMEVPTSRDV QQWQSGTAST1980
 1981 LPQREAGTDL AQAAKISTSQ ESLLDSRGHL KQTNNPYAKS YTLV

YRC Informatics Platform - Version 3.0
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