YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRAF1_PIG
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQKDQQKD AEAEGLSATT LLPKLIPSGA GREWLERRRA TIRPWGSFVD QRRFSRPRNL  60
   61 GELCQRLVRN VEYYQSNYVF VFLGLILYCV VTSPMLLVAL AVFFGACYIL YLRTLQSKFV 120
  121 LFGREVSPAH QYALAGGVSF PFFWLAGAGS AVFWVLGATL VVIGSHAAFH QIEAVDGEEL 180
  181 QMEPV

Type	Start	End	Confidence
Cytoplasmic	1	78	0.85
Transmembrane Helix	79	112	0.81
Non-Cytoplasmic	113	141	0.71
Transmembrane Helix	142	164	0.86
Cytoplasmic	165	185	0.74