YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56548606
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPFFY VPMVNTTGIV RSPYEYPQHY LVSPAAYAAL GAYMFFLILV GFPINFLTLY  60
   61 VTIEHKKLRT PLNYILLNLA VADLFMVFGG FTTTVYTSMH GYFVLGRLGC NLEGFFATLG 120
  121 GEIGLWSLVV LAVERWLVVC KPISNFRFGE NHAIMGLAFT WVAALSCAAP PLVGWSRYIP 180
  181 EGMQCSCGVD YYTRAEGFNN ESFVIYMFIC HFLIPLTIVF FCYGRLLCAV KEAAAAQQES 240
  241 ETTQRAEREV TRMVIMMVIS FLVCWLPYAG VAWYIFTHQG SEFGPVFMTL PAFFAKGASI 300
  301 YNPIIYICMN KQFRHCMITT LCCGKNPFEE EEGASSTASK TEASSVSSSS VSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.87
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	73	0.87
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	114	0.87
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	152	0.89
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	203	0.95
Transmembrane Helix	204	227	0.88
Cytoplasmic	228	252	0.94
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	286	0.83
Transmembrane Helix	287	308	0.84
Cytoplasmic	309	354	0.94