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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60279665, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMRQRSWLY KWLGIGIGVL LLTAASYSQD SEDWQYEECK LSRTGPPATI VAIDEQSPNG  60
   61 TLLVENMQIN GRAEDPDRTI SLSLRDNNDY WVILDPVKQR LYLNSTGRVL DRDPPSYIQS 120
  121 IVVQVQCTNE LVGTVILHEV RIVVRDRNDN APRFQQPRYY VAVNELTPVG TTIFSGFTGN 180
  181 NGAVDIDDGP NGQIEYTIQY NPRDPTTNRT FDIPLTLSGS VVLRERLNYE EITRYLVIIQ 240
  241 ANDRAPNPKD RLTATTTLTV DVLDGDDLGP MFLPCSLVDN TRDCKPLTYR ASILELTDPS 300
  301 RVNPVNVTPP IQAVDQDRNI QPPSDRPGIL YSILIGKPET YGEFFWMNRS TAELQLLKAI 360
  361 SREKYQHFDL VIKAEQDNGH PLPAFANLHI EVLDENNQAP YFQVATYHGF ISESAPLGTT 420
  421 ISSSANLSTP LAIIVLDNDI EETKDPMVRI SLDNYNGIFA VTAGGIVRYL TLLRPVDHEE 480
  481 QPTYAFTMIA SDGVQESAPV TINITVIDAN DNTPTFPNVS YGVSVYTDMQ PGDPVLQLTA 540
  541 LDADDGPNGL VSYKILAGDQ GHFTINDCTG VITVLPSVNL TVGRSYALTV RATDNGPTAQ 600
  601 RRSSITTVYI EVLPPNNQSP PRFHQLVYSL EISEAMRTGA TLLNIQATDR EKDPVTYSIQ 660
  661 KGDPNNVFEV SQTSGLLLLA KTLDREITDX YTLTVTASDG KPDGTSTTTV NIAVTDVNDN 720
  721 DPEFDPLLPL NLTVQEEEAN AFVGQVKATD LDLGINGQVR YRLVSYPDLF RISPNGSIFT 780
  781 AMPLDREERA QYDLIVQASD GAKDPRRTTI TLSITVLDVD DNSPVFSPPA YHATLPENSP 840
  841 VGTVILNISA LDPDLDANVT YRIRTKEARE LFAVNSLTGE LKVLRSLDFE KLLPNATTQT 900
  901 FVVEALDGGS GKMPPGLASV TVTVLDMNDF PPVFSQTLYR GMVAPNAVKG TIVTAVHAED 960
  961 LDPPGTAASR VHYKADLEQF PYSTSIFDVE ENSGNIFTRV NLNEEPNTKF SLAVIAYDDG1020
 1021 EPMKFNKSLV EITVLQXSII PVFTQEEYRF APVSENAPVG TVAGVILAAA INQTIVYSII1080
 1081 EGNEGGEFVV NNNTGVISTA KPLDYESNSS YVLRVEADSM RVVSSNLRAP AKSNTAKVFI1140
 1141 DVQDENDHPP VFTKPFYLGG VAEDAKTFTS VLQVQALDKD TGNYSAMLYR LIIPPTTDGK1200
 1201 DGFVIEPFTG VIKTAIMYRN MRRSYFKFDV VATDNYGEGL SSSAQVVVSV VNQLDMQVVV1260
 1261 SNVPPTVVEQ NKDRLIGILE RYVQDQIPGA KVVMESIGAR RFGDGYEQED YTKSDLMVYA1320
 1321 IDPLTNRALS RQELFKFLDG KLLDINKEFQ PYLGRGGRIL EIRTPDVVES VTRAVHSVGY1380
 1381 TEGALLALAV IIILCCIPAI LIVIITYRQF KERQAECAKT ARIQMALPTG KSGGAATNNL1440
 1441 YEELGDSTIP KTKRCVLKDG DRQRLISSFA SRAITAHKLS TANGILLNNF PKSESNITFL1500
 1501 SDDNPLTTTN PLYRDDVTLG SPEHQNRSYL LDMYSPSMRG LSKSIMGFPN SGSGHSWTLP1560
 1561 SRLHKWDESQ RSRRVVMDPV QWELQLLKAS LKDSKEMIDG FDGLGDEDPE PKLTVKEQAR1620
 1621 QFEQQALQDV KLRQGQDSRG SLSSEIILSV FETPHNSRPP AIIITQSDST PPPSHKPTPP1680
 1681 VLRKYTRLSS YPDLESYEVN VEIIPDPPDV PAPQPPPPPP PPSSPPPPPP PSSPPPLPPS1740
 1741 SSPPPLPPSS SPPLVPPSPS VPPHPAPPPP PPLPPPLSPS FSRPIPPSPF VLPPLPSVTS1800
 1801 LRPVSLRPAP PPLPSEPEPP KRELKGILKN LQNIADIEKS VANMYSQIDK KQRPLVINPK1860
 1861 PQVSVEPEAG VTEAEPAQEG PPSEPNPSMN SVVEELEKRF PSQSTVL

YRC Informatics Platform - Version 3.0
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