YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62183958
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.59
Transmembrane Helix	46	66	0.88
Non-Cytoplasmic	67	100	0.39
Transmembrane Helix	101	124	0.75
Cytoplasmic	125	138	0.63
Transmembrane Helix	139	160	0.87
Non-Cytoplasmic	161	165	0.55
Transmembrane Helix	166	188	0.75
Cytoplasmic	189	196	0.42
Transmembrane Helix	197	216	0.80
Non-Cytoplasmic	217	221	0.42
Transmembrane Helix	222	248	0.77
Cytoplasmic	249	290	0.38
Transmembrane Helix	291	316	0.80
Non-Cytoplasmic	317	328	0.45
Transmembrane Helix	329	351	0.57
Cytoplasmic	352	368	0.69
Transmembrane Helix	369	389	0.85
Non-Cytoplasmic	390	397	0.59
Transmembrane Helix	398	420	0.88
Cytoplasmic	421	428	0.70
Transmembrane Helix	429	446	0.86
Non-Cytoplasmic	447	471	0.83
Transmembrane Helix	472	491	0.79
Cytoplasmic	492	535	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGGAA PAAKASEPVP HPPKDQLPNV SYCITSPPPW PEAILLGFQH YLVMLGTIVI  60
   61 IPTALVPQMG GGNEEKAQVI QTSLFVAGLN TLLQSIFGTR LPAVIGGSYT FVAPTISIIL 120
  121 SGQWNDEDPV SKFKKIMRAT QGALIVASTL QIVLGFSGLW RNVTRFLSPL SAVPLVSLVG 180
  181 FGLYEFGFPG VAKCVEIGLP ELVLLVIFSQ YLAHLIRPGK NIFDRFAVLF TVIIVWIYAH 240
  241 LLTVGGAYNG KPPKTQASCR TDRAGLISGA QWISIPYPFQ WGPPSFNAGE AFAMMMASFV 300
  301 ALVESTGAFI AVARYASATP LPPSILSRGV GWQGVGILLS GLFGTGNGSS VSVENAGLLA 360
  361 LTRVGSRRVV QISAAFMIFF SILGKFGAVF ASIPAPIVGA LYCLFFAYVG AGGLGFLQFC 420
  421 NLNSFRTKFI LGFSVFLGLS IPQYFNEYTA VAGYGPVHTH ARWFNDMANV PFQSKAFVAG 480
  481 IVAFFLDNTM HKKDGQTRKD RGKHWWDKFK SFKTDTRSEE FYSLPFNLNK YFPSV